Brinjal little leaf (BLL) is a widespread illness of phytoplasma etiology in India that induces extreme financial losses. Surveys were carried out in eight brinjal-rising states of India during July 2014 to September 2015 and eighteen BLL samples exhibiting little leaf, phyllody and witches’ broom symptoms had been collected for phytoplasma identification. Presence of phytoplasmas was confirmed in all the eighteen BLL samples utilizing polymerase chain reaction with phytoplasma-specific primer pairs (P1/P6, R16F2n/R16R2). Pair smart sequence comparison and phylogenetic relationship of 16S rRNA gene sequences of BLL phytoplasma strains confirmed that sixteen out of eighteen BLL strains belonged to clover proliferation phytoplasma (16SrVI) group and two BLL strains (GKP-A and GKP-B) from Gorakhpur, Uttar Pradesh, have been categorised beneath 16SrII group. Further digital RFLP evaluation of 16S rDNA sequences allowed finer classification of BLL strains into 16SrII-D and 16SrVI-D subgroups. BLL phytoplasma strains belonging to 16SrVI-D subgroup had been discovered as probably the most widespread phytoplasma strains related to BLL illness in India. 16SrVI-D subgroup phytoplasma association with two symptomatic weed species viz. Cannabis sativa subsp. sativa at Noida, Uttar Pradesh and Portulaca oleracea at IARI fields, New Delhi was also confirmed by nested PCR assays with comparable set of phytoplasma-particular primers, pairwise 16S rDNA sequence comparison, phylogeny and digital RFLP evaluation. Out of 5 identified leafhopper species from BLL-infected fields at Noida, Uttar Pradesh and Delhi, solely Hishimonas phycitis was identified as service and natural vector of 16SrVI-D subgroup of phytoplasmas by nested PCR assays, sequence comparison, phylogeny, digital RFLP evaluation and transmission assays.
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